RnoEX6038193 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128214797-128219866:-
Coord C1 exon
chr8:128219495-128219866
Coord A exon
chr8:128215875-128216007
Coord C2 exon
chr8:128214797-128215035
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTGGTTGCACGCAGACC
3' ss Score
8.41
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AATCAGCTCAGCCTCACCCATGGGCTCAGCCGGACATCCATGAGGCCCCGCTCGAGCCGAGGGAGCATTTTCACGTTCCGAAGACGGGACCAAGGCTCTGAGGCGGACTTCGCAGATGACGAGAACAGCACTGCGGGGGAGAGTGAGAGCCACCGCACATCGCTGCTGGTACCCTGGCCCCTGCGCCATCCCAGCGCCCAAGGACAGCCCGGCCCTGGAGCCTCAGCTCCCGGTTACGTTCTCAATGGCAAAAGGAACAGCACCGTGGACTGCAATGGGGTGGTTTCCTTGCTGGGGGCAGGTGACGCAGAGGCCACCTCCCCAGGGAGCTACCTTCTCCGCCCTATGGTGCTGGACCGACCCCCAGACACG
Seq A exon
ACCACTCCGTCAGAGGAGCCCGGTGGGCCCCAGATGCTGACACCTCAGGCTCCGTGTGCAGATGGTTTTGAGGAGCCCGGAGCACGGCAACGGGCACTCAGCGCTGTCAGTGTCCTCACCAGTGCCCTGGAAG
Seq C2 exon
AGTTGGAGGAGTCCCATCGGAAGTGTCCACCATGCTGGAACCGCTTTGCCCAGCACTACCTCATCTGGGAGTGCTGTCCACTCTGGATGTCCATCAAGCAGAAGGTGAAGTTTGTGGTCATGGACCCATTTGCCGACCTCACTATCACCATGTGCATCGTGCTCAATACGCTCTTCATGGCTCTGGAGCATTACAACATGACGGCAGAGTTTGAGGAGATGCTGCAGGTCGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'19-20,'19-18,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.827 A=0.533 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(59.1=100)
A:
PF119333=DUF3451=PD(17.8=82.2)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGGTGGTTTCCTTGCTG
R:
ATGGTGATAGTGAGGTCGGCA
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]