Special

ENSG00000183873 @ hg38

Biotype
protein_coding
Gene Symbol
SCN5A
Description
sodium voltage-gated channel alpha subunit 5 [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr3:38548057-38649673:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
59.14
28.62
7
Alternative 3'ss
3
chr3:38579493-38579495
-
40.86
28.62
7
Exon Skipping
54
chr3:38557231-38557284
-
94.72
28
1
Exon Skipping
159
chr3:38579334-38579492
-
64.84
87.18
1
Exon Skipping
92
chr3:38613975-38614066
-
65.2
98.12
5
Exon Skipping
92
chr3:38613743-38613834
-
31.53
98.52
5
Intron Retention
6776
chr3:38614067-38620842
-
19.83
75.47
0
Intron Retention
4010
chr3:38609965-38613974
-
19.63
87.91
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000032511 Scn5a 1-to-1
Mouse mm9 ENSMUSG00000032511 Scn5a 1-to-1
Rat rn6 ENSRNOG00000015049 Scn5a 1-to-1
Cow bosTau6 ENSBTAG00000009155 SCN5A 1-to-1
Chicken galGal4 ENSGALG00000006112 SCN5A 1-to-1
Chicken galGal3 ENSGALG00000006112 F1NDB7_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000090724 scn12aa 3-to-1
Fruitfly dm6 FBgn0264255 para 10-to-1