Special

ENSGALG00000006112 @ galGal4

Biotype
protein_coding
Gene Symbol
SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5408261-5613834:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]



EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
24.84
38.32
0
Alternative 3'ss
3
chr2:5559002-5559004
+
69.75
34.33
0
Exon Skipping
402
chr2:5504931-5505332
+
29.64
100
0
Exon Skipping
54
chr2:5605233-5605286
+
100
0
1
Exon Skipping
92
chr2:5462147-5462238
+
5.46
21.59
5
Exon Skipping
92
chr2:5462372-5462463
+
98.08
11.52
5
Exon Skipping
147
chr2:5559002-5559148
+
87.13
35.66
0
Exon Skipping
121
chr2:5565162-5565282
+
97.07
13.04
0
Intron Retention
4230
chr2:5518492-5522721
+
7.26
28.57
0
Intron Retention
14136
chr2:5544866-5559001
+
5.59
22.39
0
Intron Retention
5011
chr2:5450562-5455572
+
9.46
40
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000183873 SCN5A 1-to-1
Human hg19 ENSG00000183873 SCN5A 1-to-1
Mouse mm9 ENSMUSG00000032511 Scn5a 1-to-1
Rat rn6 ENSRNOG00000032884 Scn11a 3-to-1
Zebrafish danRer10 ENSDARG00000090724 scn12aa 3-to-2
Zebrafish danRer10 ENSDARG00000102312 CABZ01063402.1 3-to-2
Fruitfly dm6 FBgn0264255 para 9-to-1