GgaEX1051186 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5544395-5574526:+
Coord C1 exon
chr2:5544395-5544865
Coord A exon
chr2:5565162-5565282
Coord C2 exon
chr2:5574372-5574526
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTTGTTGACAACAAGCTT
3' ss Score
0.09
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTGCTCAACCTGTTCCTTGCCTTGCTGCTCAGCTCTTTCAGTGCTGACAACCTTTCGGCACCAGACGAGGATGGAGAGATGAACAACCTGCAGCTTGCCTTTGCTCGGATCAACAGGGGTCTTCAGTATGTGAAACACACCACGTGGGATTTTTGCTGCAACGTCCTCCGGCATCCCAAGACAACAGCTGAGAAGAAGGCAATGATGAAGCTTGCTGCCCAGAATACAGGTGCCCTTAACAATTGTGTCAACAGCCACCCAACTGCTGAGCTTGGCAAAGAGATGGAGAATCACAAAGAGAACCACACAGAGGATGGGACGAATAAAAATGTGGAGAAACACCTGGGAATTACAGACAACGATGACTTTATGACCAATCCTGACCTATCAATTTGTGTTCCTATTGCTGTGGGAGAGTCTGATATCGAGGAGGAAGATGAGGAGCAAAGCACGTTTACAGAAATGGAGCAG
Seq A exon
CTTGATGAAATCAGTCTTTCTGAAGGCAGCACAGTGGATTTGACAAATCCTGCAGAACTGCTGGAGCAGATCCCTGAGTTTGCTGAGGAGCTGATGGAGCCTGAAGATTGCTTCCCCGAAG
Seq C2 exon
TTTGTGTGCGGTTCTTCCCATGCTGTTCCGTGGACATCTCAAAATTTCCAGGCAAAATTTGGTGGAGGCTCCGGAAGACTTGCTACAGGATTGTTGAACACAACTGGTTTGAGACTTTCATCATATTCATGATCTTGCTGAGCAGTGGAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=5.1),PF065128=Na_trans_assoc=PU(49.6=84.7)
A:
PF065128=Na_trans_assoc=FE(14.9=100)
C2:
PF065128=Na_trans_assoc=PD(16.4=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGAGCTTGGCAAAGAG
R:
CACGGAACAGCATGGGAAGAA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]