MmuEX6069779 @ mm10
Exon Skipping
Gene
ENSMUSG00000032511 | Scn5a
Description
sodium channel, voltage-gated, type V, alpha [Source:MGI Symbol;Acc:MGI:98251]
Coordinates
chr9:119512141-119516064:-
Coord C1 exon
chr9:119515903-119516064
Coord A exon
chr9:119512981-119513101
Coord C2 exon
chr9:119512141-119512295
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCCCCTCCCCCACAGACT
3' ss Score
12.56
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
CAGGAATCCCAAGTTGTGTCTGGTGGCCACGAGCCCCCCCAGGAGCCCAGGGCCTGGAGCCAGGTGTCAGAGACCACATCCTCTGAAGCCGAGGCCAGTACGTCTCAGGCAGACTGGCAGCAAGAGCGGGAAGCGGAGCCCCGGGCCCCGGGGTGCGGTGAG
Seq A exon
ACTCCCGAGGACAGTTACTCCGAGGGTAGCACCGCTGACATGACCAACACCGCAGACCTCCTGGAGCAAATCCCAGACCTCGGGGAGGACGTCAAGGACCCAGAGGACTGCTTCACTGAAG
Seq C2 exon
GCTGCGTCCGACGTTGTCCTTGCTGCATGGTGGACACGACGCAGGCCCCAGGGAAGGTCTGGTGGAGACTGCGCAAGACCTGCTACCGCATAGTGGAGCACAGCTGGTTCGAGACTTTCATCATCTTCATGATCCTGCTCAGCAGCGGAGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032511-'29-25,'29-24,30-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.683 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(20.1=100)
A:
PF065128=Na_trans_assoc=FE(15.2=100)
C2:
PF065128=Na_trans_assoc=PD(16.7=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTTGTGTCTGGTGGCCAC
R:
CTGTGCTCCACTATGCGGTAG
Band lengths:
256-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types