BtaEX6093433 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12045394-12049535:-
Coord C1 exon
chr22:12049374-12049535
Coord A exon
chr22:12046410-12046530
Coord C2 exon
chr22:12045394-12045548
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCTTACAATCCTGCCTGCAGCTT
3' ss Score
7.71
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
CAGGAATCCCAGCCGGCGTCCGGCAGCCCAGAGGCCCTCCCAGAGCCGAGGGTCTGGAGCCAGGTGTCGGAGACCACCTCCTCTGGGGCCGAGGCCAGTGAGGTTCAGGCAGACTTGCGGCAGCAGCGGCGAGCAGAGGCCCCCGCCCCAGGGTGCAGTGAG
Seq A exon
CTTCCCGAAGACAGTTACTCTGAGGGGAGCACGGCAGATATGACCAACACTGCTGACCTCCTGGAGCAGATCCCTGACCTCGGAGAGGATGTCAAAGATCCAGAGGACTGCTTCACTGAAG
Seq C2 exon
GCTGTGTCCGCCGCTGTCCCTGCTGCACCGTGGACACCACACAGGCCCACGGGAAGGTCTGGTGGAGGCTGCGCAAGACCTGCTACCGCATCGTGGAGCACAGCTGGTTCGAGACGTTCATCATCTTCATGATCCTGCTCAGCAGTGGCGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'21-25,'21-24,22-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.683 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(20.2=100)
A:
PF065128=Na_trans_assoc=FE(15.2=100)
C2:
PF065128=Na_trans_assoc=PD(16.7=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCAGAGCCGAGGGTC
R:
ATGAACGTCTCGAACCAGCTG
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]