GgaEX6042493 @ galGal3
Exon Skipping
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21098448-21100870:+
Coord C1 exon
chr7:21098448-21098927
Coord A exon
chr7:21100009-21100126
Coord C2 exon
chr7:21100716-21100870
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTTATTTACAGAAG
3' ss Score
9.64
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
Exon sequences
Seq C1 exon
GTACTGAACTTATTTTTGGCCTTGCTGTTGAGCTCATTTAGTGCTGACAACCTTGCTGTGACAGATGATGATAATGAAATGAACAATCTCCAAATTGCTGTAGCAAGAATGCAGAAGGGCATAGACTATGTGAAAAGAAAAGCACGTGAATTCATCCAGAAGGCTTTTGTTAAAAAACAAAAAGCTTTAGATGAAATCAAACCACTTGAAGATTTGAACAACAAAAACAGTTGTATTTCCAACCATACTGCAGAATTAAGCAAGGACCATGATTACATTAAAGATGTGAACGGAACAACTAGTGGCATAGGCACAGGCAGCAGTGTGGAGAAATACATAATTGATGAAAGTGATTATATGTCATTCATAAACAACCCAAGCCTGACTGTGACAGTGCCCATTGCTGTGGGTGAATCTGACTTTGAAAATTTAAATACAGAGGAGTTTAGTAGTGAATCAGACCTAGAAGAGAGCAAAGAG
Seq A exon
AAGCTAAATATGTCCAGTTCATCTGAAGGCAGCACAGTTGACATTGGACTTCCTGCAGAAGAGCAACCAGAAGCTGAACCTGAGGAATCCATGGAGCCAGAGGCCTGCTTCACCGAAG
Seq C2 exon
GCTGTGTACAGAGGTTCAAGTGCTGTCAAGTAAGCATAGAAGAAGGGAGAGGAAAGCAGTGGTGGAACCTTAGAAAAACATGCTTCAGAATTGTTGAACACAACTGGTTTGAGACTTTCATTGTCTTTATGATTCTCCTCAGCAGTGGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=5.0),PF065128=Na_trans_assoc=PU(61.5=85.0)
A:
PF065128=Na_trans_assoc=FE(17.6=100)
C2:
PF065128=Na_trans_assoc=PD(19.9=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGGAACAACTAGTGGCA
R:
ACCACTGCTTTCCTCTCCCTT
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]