GgaEX6042493 @ galGal4
Exon Skipping
Gene
ENSGALG00000010943 | SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr7:19122051-19124473:+
Coord C1 exon
chr7:19122051-19122530
Coord A exon
chr7:19123612-19123729
Coord C2 exon
chr7:19124319-19124473
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTTTTATTTACAGAAG
3' ss Score
9.64
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
Exon sequences
Seq C1 exon
GTACTGAACTTATTTTTGGCCTTGCTGTTGAGCTCATTTAGTGCTGACAACCTTGCTGTGACAGATGATGATAATGAAATGAACAATCTCCAAATTGCTGTAGCAAGAATGCAGAAGGGCATAGACTATGTGAAAAGAAAAGCACGTGAATTCATCCAGAAGGCTTTTGTTAAAAAACAAAAAGCTTTAGATGAAATCAAACCACTTGAAGATTTGAACAACAAAAACAGTTGTATTTCCAACCATACTGCAGAATTAAGCAAGGACCATGATTACATTAAAGATGTGAACGGAACAACTAGTGGCATAGGCACAGGCAGCAGTGTGGAGAAATACATAATTGATGAAAGTGATTATATGTCATTCATAAACAACCCAAGCCTGACTGTGACAGTGCCCATTGCTGTGGGTGAATCTGACTTTGAAAATTTAAATACAGAGGAGTTTAGTAGTGAATCAGACCTAGAAGAGAGCAAAGAG
Seq A exon
AAGCTAAATATGTCCAGTTCATCTGAAGGCAGCACAGTTGACATTGGACTTCCTGCAGAAGAGCAACCAGAAGCTGAACCTGAGGAATCCATGGAGCCAGAGGCCTGCTTCACCGAAG
Seq C2 exon
GCTGTGTACAGAGGTTCAAGTGCTGTCAAGTAAGCATAGAAGAAGGGAGAGGAAAGCAGTGGTGGAACCTTAGAAAAACATGCTTCAGAATTGTTGAACACAACTGGTTTGAGACTTTCATTGTCTTTATGATTCTCCTCAGCAGTGGAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.962 C2=NA
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=5.0),PF065128=Na_trans_assoc=PU(77.3=85.0)
A:
PF065128=Na_trans_assoc=FE(21.6=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACGGAACAACTAGTGGCA
R:
ACCACTGCTTTCCTCTCCCTT
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]