Special

ENSG00000183873 @ hg19

Biotype
protein_coding
Gene Symbol
SCN5A
Description
sodium channel, voltage-gated, type V, alpha subunit [Source:HGNC Symbol;Acc:10593]
Coordinates
chr3:38589548-38691164:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
66.18
2.99
7
Alternative 3'ss
3
chr3:38620984-38620986
-
33.82
2.99
7
Exon Skipping
54
chr3:38598722-38598775
-
93.8
25.17
1
Exon Skipping
441
chr3:38622422-38622862
-
96.85
12.9
0
Exon Skipping
159
chr3:38620825-38620983
-
56.98
87.8
1
Exon Skipping
92
chr3:38655466-38655557
-
55.4
98.12
5
Exon Skipping
92
chr3:38655234-38655325
-
39.3
98.52
5
Exon Skipping
372
chr3:38645203-38645574
-
95.47
45.28
0
Exon Skipping
133
chr3:38640409-38640541
-
95.1
48
0
Intron Retention
4149
chr3:38618273-38622421
-
19.8
94.74
0
Intron Retention
6776
chr3:38655558-38662333
-
20.66
72.85
0
Intron Retention
4010
chr3:38651456-38655465
-
25.91
87.91
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000032511 Scn5a 1-to-1
Mouse mm9 ENSMUSG00000032511 Scn5a 1-to-1
Rat rn6 ENSRNOG00000015049 Scn5a 1-to-1
Cow bosTau6 ENSBTAG00000009155 SCN5A 1-to-1
Chicken galGal4 ENSGALG00000006112 SCN5A 1-to-1
Chicken galGal3 ENSGALG00000006112 F1NDB7_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000090724 scn12aa 3-to-2
Zebrafish danRer10 ENSDARG00000102312 CABZ01063402.1 3-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1