RnoEX6038198 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128197717-128201519:-
Coord C1 exon
chr8:128201361-128201519
Coord A exon
chr8:128198493-128198613
Coord C2 exon
chr8:128197717-128197871
Length
121 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCCCCTCCCCCACAGACC
3' ss Score
12.35
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAATCCCAAGTTGTGTCTGGTGGCCACGAGCCCTACCAGGAGCCCAGGGCCTGGAGCCAGGTGTCAGAGACCACGTCCTCTGAAGCTGGGGCCAGTACATCTCAGGCAGACTGGCAGCAAGAGCAGAAAACGGAGCCCCAGGCCCCGGGGTGCGGTGAG
Seq A exon
ACCCCTGAGGACAGTTACTCCGAGGGCAGCACAGCTGACATGACCAACACCGCCGACCTCCTGGAGCAAATCCCAGACCTTGGTGAGGACGTCAAGGACCCAGAGGACTGCTTTACTGAAG
Seq C2 exon
GCTGCGTCCGACGCTGTCCCTGCTGCATGGTAGACACAACCCAGTCCCCAGGGAAGGTCTGGTGGCGATTGCGCAAGACCTGCTACCGCATCGTGGAGCACAGCTGGTTCGAGACTTTCATCATCTTCATGATCCTGCTCAGCAGTGGAGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'26-29,'26-28,28-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.683 C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(19.8=100)
A:
PF065128=Na_trans_assoc=FE(15.3=100)
C2:
PF065128=Na_trans_assoc=PD(16.8=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGAGACCACGTCCTCTG
R:
TGCTGAGCAGGATCATGAAGA
Band lengths:
242-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]