GgaEX0008656 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5502291-5514589:+
Coord C1 exon
chr2:5502291-5502473
Coord A exon
chr2:5504931-5505332
Coord C2 exon
chr2:5514457-5514589
Length
402 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTGGGGGTTTCTAGACT
3' ss Score
6.44
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCACTAGCTGCTAAAGGGATTGACTCAATGTCACTTAGCTCCCTGGAAATGTCACCTTTAGCATCCAAGAATGCCAAGGAAAGAAGAAACAGGAGAAAGAAAAAGAAATCTTTGGGAGCAGAAGAATATGGGGAAGACCAGAGGAATTCCAAGTGTGAATATGATGACAGTCAGAGGAGAATG
Seq A exon
ACTCTCCTTGGCATTAGTTATGGTCCCAGTGCAAACTTGGTGAAGCGCAGAACCAGCCACGGAAGCATATTCAGTTTCCGACTCCGTGGTAGAGACACTGGCTCCGAAACAGATTTTGCCGATGATGAGATCAGCACCGCTGGGGAAAATGAAAGCCACCGGGGCTCTCTCTTAATTCCAAGATCTGGGAGACGTCCGAGCATTCAAAGTCAAGTGAGCCATAGTTCTCACCCTACTACTCCCAACTACACCCAGACGGGCAAAAGGAACAGCTCAGTGGATTGCAATGGTGTGGTTTCCCTGATAGGAGGAGGCACCGGGGCACTCAACCCAGACCCTACTTCTCCTGCAGGGTTACTGCTCCCCCCATTTATTATGGAAAAACCTGGGACAGGCGATCTG
Seq C2 exon
ACCTCTCCCTCAGATGAGGCCAGCAAGAAGCAGCTTTTAATGCCCCATCGCCCATCGGTGGACCACTCAGATGAGCCCTTCCAGAGACAGAGGGCAGTGAGTGCTGTCAGCATCATCACCAGTGCCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=0.701 C2=0.550
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(21.0=75.4)
A:
PF119333=DUF3451=FE(60.7=100)
C2:
PF119333=DUF3451=PD(16.9=82.2)
Main Inclusion Isoform:
ENSGALT00000031281fB942
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTAGCTGCTAAAGGGATTGA
R:
GGGCACTGGTGATGATGCTG
Band lengths:
310-712
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]