RnoEX0078581 @ rn6
Exon Skipping
Gene
ENSRNOG00000015049 | Scn5a
Description
sodium voltage-gated channel alpha subunit 5 [Source:RGD Symbol;Acc:3637]
Coordinates
chr8:128215875-128220587:-
Coord C1 exon
chr8:128220408-128220587
Coord A exon
chr8:128219495-128219866
Coord C2 exon
chr8:128215875-128216007
Length
372 bp
Sequences
Splice sites
3' ss Seq
CACCATCCCTGTGCCCTCAGAAT
3' ss Score
8.75
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GCTCTCACCATCAGGGGTGTGGATACCGTGTCCCATAGCTCTCTGGAGATGTCTCCTTTGGCCCCAGTAACCAACCATGAGAGAAAGAGCAAAAGGAGGAAACGACTATCTTCGGGGACAGAGGATGGTGGGGATGACAGGCTCCCCAAGTCGGACTCAGAAGATGGTCCCAGAGCATTG
Seq A exon
AATCAGCTCAGCCTCACCCATGGGCTCAGCCGGACATCCATGAGGCCCCGCTCGAGCCGAGGGAGCATTTTCACGTTCCGAAGACGGGACCAAGGCTCTGAGGCGGACTTCGCAGATGACGAGAACAGCACTGCGGGGGAGAGTGAGAGCCACCGCACATCGCTGCTGGTACCCTGGCCCCTGCGCCATCCCAGCGCCCAAGGACAGCCCGGCCCTGGAGCCTCAGCTCCCGGTTACGTTCTCAATGGCAAAAGGAACAGCACCGTGGACTGCAATGGGGTGGTTTCCTTGCTGGGGGCAGGTGACGCAGAGGCCACCTCCCCAGGGAGCTACCTTCTCCGCCCTATGGTGCTGGACCGACCCCCAGACACG
Seq C2 exon
ACCACTCCGTCAGAGGAGCCCGGTGGGCCCCAGATGCTGACACCTCAGGCTCCGTGTGCAGATGGTTTTGAGGAGCCCGGAGCACGGCAACGGGCACTCAGCGCTGTCAGTGTCCTCACCAGTGCCCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015049-'18-18,'18-17,19-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=0.827 C2=0.533
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(21.6=75.0)
A:
PF119333=DUF3451=FE(59.1=100)
C2:
PF119333=DUF3451=PD(17.8=82.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCAGGGGTGTGGATACC
R:
CAGGGCACTGGTGAGGACA
Band lengths:
303-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]