GgaEX1051177 @ galGal4
Exon Skipping
Gene
ENSGALG00000006112 | SCN5A
Description
sodium channel, voltage gated, type V alpha subunit [Source:HGNC Symbol;Acc:HGNC:10593]
Coordinates
chr2:5504931-5518491:+
Coord C1 exon
chr2:5504931-5505332
Coord A exon
chr2:5514457-5514589
Coord C2 exon
chr2:5518253-5518491
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGTTCATTTCAACAGACC
3' ss Score
8.85
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACTCTCCTTGGCATTAGTTATGGTCCCAGTGCAAACTTGGTGAAGCGCAGAACCAGCCACGGAAGCATATTCAGTTTCCGACTCCGTGGTAGAGACACTGGCTCCGAAACAGATTTTGCCGATGATGAGATCAGCACCGCTGGGGAAAATGAAAGCCACCGGGGCTCTCTCTTAATTCCAAGATCTGGGAGACGTCCGAGCATTCAAAGTCAAGTGAGCCATAGTTCTCACCCTACTACTCCCAACTACACCCAGACGGGCAAAAGGAACAGCTCAGTGGATTGCAATGGTGTGGTTTCCCTGATAGGAGGAGGCACCGGGGCACTCAACCCAGACCCTACTTCTCCTGCAGGGTTACTGCTCCCCCCATTTATTATGGAAAAACCTGGGACAGGCGATCTG
Seq A exon
ACCTCTCCCTCAGATGAGGCCAGCAAGAAGCAGCTTTTAATGCCCCATCGCCCATCGGTGGACCACTCAGATGAGCCCTTCCAGAGACAGAGGGCAGTGAGTGCTGTCAGCATCATCACCAGTGCCCTGGAAG
Seq C2 exon
AGCTTGAGGAATCACACCAGAAATGCCCTCCATGCTGGAACCACTTTGCTGTTAAATTTCTCATTTGGGATTGCTGCCCGTTTTGGCTTTTAATCAAGAAATTTGTCAAGTTTGTGGTAATGGACCCATTTACTGACCTCACCATCACCCTCTGCATTGTGCTGAACACACTCTTCATGGCGTTGGAGCATTATAAGATGACAAAGGAGTTTGACCACATGCTTTACATAGGCAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'15-17,'15-16,16-17
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.701 A=0.550 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(60.7=100)
A:
PF119333=DUF3451=PD(16.9=82.2)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Inclusion Isoform:
ENSGALT00000031281fB942
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACTTCTCCTGCAGGGTT
R:
ATGCTCCAACGCCATGAAGAG
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]