BtaEX6093429 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009155 | SCN5A
Description
Bos taurus sodium channel, voltage-gated, type V, alpha subunit (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_174458]
Coordinates
chr22:12065646-12072848:-
Coord C1 exon
chr22:12072477-12072848
Coord A exon
chr22:12066827-12066959
Coord C2 exon
chr22:12065646-12065884
Length
133 bp
Sequences
Splice sites
3' ss Seq
GATCTCTCGGTTACACCCAGACC
3' ss Score
3.44
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
Exon sequences
Seq C1 exon
AATCGTTTCAGCATCACCCATGGCCTCAGCAGGACCTCCATGAAGCCGCGCTCCAGCCACGGGAGCATTTTCACCTTCCGCCGACGGGACCTGGGCTCCGAGACAGATTTTGCGGACGATGAAAACAGCACCGCCGGGGACAGTGAGAGCCACCGCACATCACTGCTGGTGCCTTGGCCCCTGCGGCGGCCTAGTACCCTGGGACAGCCCAGTCCCGGAACCTCAACTCCCGGCCACGTGCTCAACGGCAAAAGGAACAGCACTGTGGACTGTAACGGGGTGGTCTCCTTGCTGGGGGCAGGAGACCCCGAGGCCACCTCCCCAGGGAGTCACCTCCTCCACCCTATGAAGCTGGAGCGCCCCCCAGACACG
Seq A exon
ACCACACCATCGGAGGAGCCGGGCAGGCCCCAGACGCTGACGCCCCAGGCTCCGTGTGTAGACGGCTTCGAGGAGCCAGGAGAGCGGCAGCGAGCCCTCAGTGCAGTGAGCGTCCTCACCAGTGCCCTGGAAG
Seq C2 exon
AGCTGGAGGAGTCTCAGCGCAGGTGTCCACCGTGCTGGATCCGTTTTGCCCAGCACTACCTGATCTGGGAGTGCTGCCCGCTGTGGATGTCCATTAAGCAGAAAGTGAAGTTCATGGTCATGGACCCATTTGCTGACCTCACCATCACCATGTGCATCGTGCTTAACACGCTCTTCATGGCACTGGAGCACTACAACATGACGACCGAATTTGAGGAGATGCTGCAGGTTGGAAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009155-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.556 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=FE(59.1=100)
A:
PF119333=DUF3451=PD(17.8=82.2)
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCCTCCACCCTATGAAGC
R:
CGGTCGTCATGTTGTAGTGCT
Band lengths:
248-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]