GgaEX6027189 @ galGal3
Exon Skipping
Gene
ENSGALG00000000252 | Q8AV15_CHICK
Description
NA
Coordinates
chr27:1551207-1552284:-
Coord C1 exon
chr27:1552129-1552284
Coord A exon
chr27:1551821-1551944
Coord C2 exon
chr27:1551207-1551445
Length
124 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCTCCTCTCCTCTAGTTC
3' ss Score
10.48
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TTGCAGGACAGGCAGTCCAGCAGCAGTTCCCTGCACAGCAGCGCGGCCGGGAAGAAGAGCGACTCGGATCTGAACAGCGACCAGGACAAGGCAAAGGACTGCAATGGGCAGGTGGTCCCCAAGGTTGTGCTGCAGCGCTCTGCCACGGTGATCGAA
Seq A exon
TTCAACCCAGCCAACGAGACAGAGAAATCAGACTCCAACCACCTCACCGTGGGCAATCAAGATGGGCCAGGGCTTGAGAAGAGGGTGGGGAGTGCCGTCAGCGTCATCTCCAACACCATGGAAG
Seq C2 exon
AGCTGGAGGAAGCTCACCAGAAGTGCCCATCCTGGTGGTACAAATTTGCCCACACGTTCCTGGTGTGGGACTGCTGCTATCCGTGGCTGAAGCTGAAGCAATTTGTCAAGCTGGTGGTGATGGACCCCTTCGTGGACCTGGGCATCACCATCTGCATCGTGCTCAACACGCTGTTCATGGCCATGGAGCACTACCCCATGACAGAGGAGTTTGAGAACGTGCTGACCGTGGGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000252-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.429 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(2.0=3.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGGACAAGGCAAAGGAC
R:
CATGAACAGCGTGTTGAGCAC
Band lengths:
257-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]