DreEX6067614 @ danRer10
Exon Skipping
Gene
ENSDARG00000098738 | scn4aa
Description
sodium channel, voltage-gated, type IV, alpha, a [Source:ZFIN;Acc:ZDB-GENE-051201-2]
Coordinates
chr12:4838703-4841473:+
Coord C1 exon
chr12:4838703-4838861
Coord A exon
chr12:4839618-4839738
Coord C2 exon
chr12:4841235-4841473
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTATTTTATGTATCTTTCAGTTA
3' ss Score
9.03
5' ss Seq
AGGGTAACC
5' ss Score
5.4
Exon sequences
Seq C1 exon
ACAGGCAGTAAAGCATCTTTGGCCAGCCAGAAAACACAAAGTCGAGGGTCAAACCGGACAGGTTCCCTGCACGATCTTGCAGATGAAGATGTCATAAAGGACTGTAATGGCCGAATAGTACCTCGCCTTATTGTCAACAGAGTTTCCTCTAACAAAGAG
Seq A exon
TTATCAGCAGAAGAGGACCAGAAGTCTCTGAGTTCAAAACACAGCATGCAGTACTTGGACCAGCCCAAACTCTCCAAGAGAACAGCTAGTGCTCTCAGTGTACTCACTGCAACTATGGAGG
Seq C2 exon
GGTTGGAGGATGCCCAGAGGCCTTGTCCCCCTGGCTGGTATAAGTTTGCGGATATGTTCCTTAAATGGGACTGCTGCGCTCCCTGGATCTTGTTTAAGAAGTGGGTTCATTTTGTAGTGATGGACCCATTCGTTGACCTGGGTATCACCATCTGCATTGTGCTCAATACACTGTTCATGGCCATGGAGCATTACCCTATGAGTCCACATTTTGAACATGTCCTCTCAGTGGGCAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098738-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTCCCTGCACGATCTTG
R:
TGCAGATGGTGATACCCAGGT
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]