DreEX6096641 @ danRer10
Exon Skipping
Gene
ENSDARG00000102312 | CABZ01063402.1
Description
NA
Coordinates
chr24:40747530-40749962:+
Coord C1 exon
chr24:40747530-40747727
Coord A exon
chr24:40748684-40748848
Coord C2 exon
chr24:40749597-40749962
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTGCTGTCTGTCAGGCG
3' ss Score
8.09
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACGCTGCGCTCTGCAGGAAAAGCGTACATGGTGTTTTTCGTGGTGGTGATCTTCCTGGGCTCCTTTTACCTGGTCAATCTGATCCTGGCGGTGGTGGCGATGGCCTACGAGGAGCAGAACCAGGCCACCATCGCTGAAGCTCTGCAGAAAGAGCAGGAGTTCCAGCTCGCCATGGAGCAGCTCAAGAAGGAGCAGCAG
Seq A exon
GCGGCTCAGAAAGCACAAGAAACAGAGTCCATCCTGACGGCAGACGTGTCGCCCTTTTCTACACAAGACAAAGCCAAGCTGGAGCGCAGGAAAAGCTCCCGGCCGCTGTCAGAGGGCACAGGAGAAGACAAACCGGCCAAACTGGACCCCATAGAGGGCATTAAG
Seq C2 exon
CAAACACACTCTCTGCTGGTGCGCACCCTGTCTCTGCGGGCCCGAAGGGAGAGCGCGGTCAGCATCTTCAACTTCCGGCCGGTCAACAAGGATTCGGAGCTGGACTTTGCCGATGATGAGTTCAGCAATCACGGAGACTCGGACAGTCGAGGTGGCGCTCTGGCGCTGCCCTGGAGCCGCAGACGCACCAGTGCTCAGAGCTCCTGCAGCCACAGCTCACAGTTCTTCTTCCCCAGCTTTAACATCAATGGCAAACTCATGGTAGCCGTGGAGCAGAACGGCATCTCCAGCCAGGGGCCGCTGACCCCCATGACCCCGCTGACCCCACTGCCCGCCTGCACCATGGAGAAGCTCAAGGAGGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102312-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.564 C2=0.352
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(11.9=47.0),PF119333=DUF3451=PU(13.3=48.5)
A:
PF119333=DUF3451=FE(22.5=100)
C2:
PF119333=DUF3451=FE(50.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTCCTTTTACCTGGTCA
R:
CTCCGAATCCTTGTTGACCGG
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]