DmeEX6002871 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16500507-16505816:-
Coord C1 exon
chrX:16505507-16505816
Coord A exon
chrX:16503990-16504298
Coord C2 exon
chrX:16500507-16500569
Length
309 bp
Sequences
Splice sites
3' ss Seq
ACCATACACAATTGTTGTAGGAA
3' ss Score
5.47
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GCAATGCGACGACGATTACGTGTGCCTGCAGGGGTTTGGTCCGAATCCGAATTATGGCTACACCAGCTTCGATTCGTTCGGATGGGCTTTCCTGTCCGCCTTCCGGCTGATGACACAGGACTTCTGGGAGGATCTGTACCAGCTGGTGTTGCGCGCCGCCGGACCATGGCACATGCTGTTCTTTATAGTCATCATCTTCCTAGGTTCATTCTATCTTGTGAATTTGATTTTGGCCATTGTTGCCATGTCGTATGACGAATTGCAAAAGAAGGCCGAAGAAGAAGAGGCTGCCGAAGAGGAGGCGATACGT
Seq A exon
GAAGCGGAAGAAGCTGCCGCCGCCAAAGCGGCCAAGCTGGAGGAGCGGGCCAATGCGCAGGCTCAGGCAGCAGCGGATGCGGCTGCCGCCGAAGAGGCTGCACTGCATCCGGAAATGGCCAAGAGTCCGACGTATTCTTGCATCAGCTATGAGCTATTTGTTGGCGGCGAGAAGGGCAACGATGACAACAACAAAGAGAAGATGTCCATTCGGAGCGTCGAGGTGGAGTCGGAGTCGGTGAGCGTTATACAAAGACAACCAGCACCTACCACAGCACACCAAGCTACCAAAGTTCGTAAAGTGAGCACG
Seq C2 exon
ACATCCTTATCCTTACCTGGTTCACCGTTTAACATACGCAGGGGATCACGTAGTTCTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-'17-17,'17-16,19-17=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.443 C2=0.845
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(32.1=76.9)
A:
PF119333=DUF3451=PU(96.8=58.3),PF119333=DUF3451=PU(1.9=2.9)
C2:
PF119333=DUF3451=FE(8.4=100)
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0309614, FBpp0311217
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTACGTGTGCCTGCAGGG
R:
TACGTGATCCCCTGCGTATGT
Band lengths:
349-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)