DreEX6029419 @ danRer10
Exon Skipping
Gene
ENSDARG00000090724 | scn12aa
Description
sodium channel, voltage gated, type XII, alpha a [Source:ZFIN;Acc:ZDB-GENE-060908-2]
Coordinates
chr2:52359327-52363419:-
Coord C1 exon
chr2:52363222-52363419
Coord A exon
chr2:52362199-52362375
Coord C2 exon
chr2:52359327-52359674
Length
177 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCACTTTTATATTAGGCT
3' ss Score
7.15
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACTCTGCGGTCGGCGGGGAAGACCTACATGATCTTCTTTGTGTTGGTGATTTTTCTGGGTTCATTTTACCTGGTAAACTTGATCCTGGCTGTGGTGGCTATGGCGTACGAGGAGCAGAACCAGGCCACCATCGCTGAAGCCTGGGCCAAAGAGAGAGAGTTTCAGCTGGCCATGGAGCATCTGCGCAAGGAGCAGAGG
Seq A exon
GCTTTAGCAAAACAGCGCAGAAAAGAGGCCGAGATGGCTCTGGCAGCAGATTTTTGTCCATCTCCTTTCTCCCGAAAAGACTCGATAAAATGCAGAACCAGAACGAGATCCCACAGAACGCTCTCAGAGGAGATTGAGGACAGCTTTTTGCCAAAGTTTGAACCGCTTGATGAAAAA
Seq C2 exon
CCAGCTCACCCTCTCTTGGCCACACTCTCCTCTCATCCTCTGAGCACTCGTCGGGGAAGCCAAATGAGCATCTTCACCTTCAGGCCGCGCAATAGTTCCGAGGCCGACTTTGCAGATGACGAGCACAGTGTTGCTGATTATGGGCGGAGCCGAGCGGGATCCATGGCAACGCCGTGGCATAAACACCGCACGGGCAGCATCAGGAGTCACTCGTCTCAGGTGTTCACGCCAACACTCGCCAACGGCAGACTCAACATTTCTCTGGAGCAGAACGGCATCACTGGCATCGGCCTGCACACACCCACCACTGGCCCCAAGTTCAGCATGGAGAAGGTCAAAGAGGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090724-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.119 C2=0.750
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(12.0=47.0),PF119333=DUF3451=PU(12.9=47.0)
A:
PF119333=DUF3451=FE(24.2=100)
C2:
PF119333=DUF3451=FE(47.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCGTACGAGGAGCAGAA
R:
TCCGCCCATAATCAGCAACAC
Band lengths:
248-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]