DreEX6098166 @ danRer10
Exon Skipping
Gene
ENSDARG00000004789 | lrp1ba
Description
low density lipoprotein receptor-related protein 1Ba [Source:ZFIN;Acc:ZDB-GENE-050208-608]
Coordinates
chr22:14582646-14588990:-
Coord C1 exon
chr22:14588745-14588990
Coord A exon
chr22:14586510-14586707
Coord C2 exon
chr22:14582646-14582850
Length
198 bp
Sequences
Splice sites
3' ss Seq
TTGATTTTGTCTTTTTTCAGATC
3' ss Score
12
5' ss Seq
GCGGTAGGA
5' ss Score
6.86
Exon sequences
Seq C1 exon
ATGAGTGTTCGATACGAAAAGGCGGCTGTAGCCATGAGTGCTCGGTGGCTCCTGGTAAAGGGGTCGTATGTTCCTGTCCCGCCGGGTTCCAGTTGGGCTCGGACGCTCAGACCTGCGAGATTCTGGATTACTGCTCAAAGCACCTACGTTGCAGCCAAGTATGCGAACAGCACAAAAATACTGTGAAATGCTCCTGCTATCCAGGCTGGAGTCTTGGATCTGACGGAGACAGCTGCTACAGCACAG
Seq A exon
ATCCTTTTGAGGCCTTCATCATTTTTTCTATCAGACATGAAATACGTCGCATAAATCTGCATAAAGGCGACTACAGCCTGTTAGTCCCCGGGCTCAGAAACACCATCGCTTTGGATTTCCATTTCAGCCAAAGCTTGTTGTATTGGACTGACGTCGTAGAGGACAAAATTTACCGCGGGAAGCTGTCAGAGGGAGGCG
Seq C2 exon
GTGTTTCGGCAATTGAAGTGGTGGTCCAGCATGGTCTAGCCACTCCAGAGGGCCTTGCTGTTGATTGGATAGCTGGGAATCTCTACTGGATCGACAGCAACCTAGACCAGATTGAAGTATCCAAGCTAAACGGCGAATTGCGAACCACCCTCATTGCAGGGGGAATGGAACACCCCCGGGCCATTGCTGTGGATCCTGGCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004789-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(4.7=2.4),PF146701=FXa_inhibition=WD(100=45.1),PF146701=FXa_inhibition=WD(100=41.5)
A:
PF0005812=Ldl_recept_b=PU(46.7=31.8)
C2:
PF0005812=Ldl_recept_b=PD(48.9=31.9),PF0005812=Ldl_recept_b=WD(100=59.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGTCGTATGTTCCTGTCC
R:
AATCAACAGCAAGGCCCTCTG
Band lengths:
254-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]