DreEX6098571 @ danRer10
Exon Skipping
Gene
ENSDARG00000061757 | rabgap1l
Description
RAB GTPase activating protein 1-like [Source:ZFIN;Acc:ZDB-GENE-050208-389]
Coordinates
chr22:17302652-17318420:+
Coord C1 exon
chr22:17302652-17302818
Coord A exon
chr22:17306309-17306435
Coord C2 exon
chr22:17318327-17318420
Length
127 bp
Sequences
Splice sites
3' ss Seq
CATGCTGTTGTATGTTTTAGGGC
3' ss Score
11.83
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
ATAAGCAGGTCTACATGACGGTGGCTGTGGATCTGGTGGTGACCGAGGTCGTTGAACCGGTTCGGTTCCTCATGGAGGCTCTAGTGCGGGTCTATCCAGCCAATGAGAGGTTCTGGTATTTCAGCAGGAAGGCCTTCTGTGAAACCTTTTACCTCAAGCTCAAACAG
Seq A exon
GGCTCAGTGAAGGGCAGTCAGGACGATATGATGTATGAAGTGGTGAGTCTGGAGAAGCACTCAGAGTGTGGGTCTCAAGCTCGTGGCCGTCTGCAGTCCCCCACTGAGGAAGAGGAGCCAGAGGAAG
Seq C2 exon
ATAGCGACAGTGAGATCTCAAGTGGGACAGGCGATGTGTCAAAGGACTGTCCCGAGAAGATTCTGGAGTCCTGGGGAGGAATCCTCAACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061757-'10-11,'10-8,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.442 C2=0.344
Domain overlap (PFAM):
C1:
PF124733=DUF3694=PD(27.1=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGTCTACATGACGGTGG
R:
CCTCCCCAGGACTCCAGAATC
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]