RnoEX0073415 @ rn6
Exon Skipping
Gene
ENSRNOG00000002736 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:RGD Symbol;Acc:1304620]
Coordinates
chr13:78393372-78462777:-
Coord C1 exon
chr13:78462611-78462777
Coord A exon
chr13:78443042-78443183
Coord C2 exon
chr13:78393372-78393465
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATATGATTTTATTGTTTCAGTCT
3' ss Score
7.06
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATAAACGGGTGTACATGACTGTTGCAGTGGACATGGTGGTCACAGAGGTGGTAGAGCCAGTCCGCTTTCTCCTGGAGACAGTAGTGCGTGTATACCCTGCAAATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTTACAGAGACTTTCTTCATGAGGTTGAAACAG
Seq A exon
TCTGAGGGAAAAGGCCATAGCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAAGAGGAGCCGGTCACCCCTACTAGTGGAGGGGGCCCAGCCTCACCCCAGGAGGATGAAGCAGAAGAGG
Seq C2 exon
AGAGTGATAATGAACTCTCAAGTGGAACAGGTGATGTGTCAAAAGACTGTCCTGAGAAGATCCTCTATTCTTGGGGAGAATTGTTAGGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002736-'18-29,'18-26,21-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.625 C2=0.384
Domain overlap (PFAM):
C1:
PF124733=DUF3694=PD(27.1=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTGCAGTGGACATGGTG
R:
TCTTCCTAACAATTCTCCCCAAGA
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]