GgaEX1047833 @ galGal3
Exon Skipping
Gene
ENSGALG00000004578 | RABGAP1L
Description
NA
Coordinates
chr8:7579871-7594746:-
Coord C1 exon
chr8:7594580-7594746
Coord A exon
chr8:7590426-7590570
Coord C2 exon
chr8:7579871-7579964
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGCACCTATTTTGTTTCAGTCT
3' ss Score
7.45
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATAAGCGTGTGTACATGACTGTGGCCGTGGATATGGTTGTTACTGAGGTAGTAGAACCAGTGCGGTTCTTGCTGGAGACTGTTGTGCGCGTGTATCCTGCCAACGAACGCTTCTGGTACTTCAGCAGGAAAACCTTCACAGAAACTTTCTATATGAAGCTGAAGCAG
Seq A exon
TCTGAAGGAAAAAGCCACACCAGTGCTGGGGATCCCATTTATGAAGTTGCAAGTCTACAAAGAGAGTCTGCAAGAGAAGAGCAACTGCTCAGCCCAACAAGTGGAGGGGGGCCTGTATCATCCCAGGAAGATGAGGCAGAAGAAG
Seq C2 exon
AGAGTGATAATGAACTTTCCAGTGGCACTGGTGATGTGTCAAAGGATTGTCCTGAGAAGATTTTGTATTCCTGGGGAGAATTACTAGGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004578-'12-18,'12-13,14-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.727 C2=0.376
Domain overlap (PFAM):
C1:
PF124733=DUF3694=PD(27.1=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTGTGTACATGACTGTGG
R:
TCCCTAGTAATTCTCCCCAGGA
Band lengths:
254-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]