MmuEX6028614 @ mm9
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:162602582-162631009:-
Coord C1 exon
chr1:162630843-162631009
Coord A exon
chr1:162612172-162612313
Coord C2 exon
chr1:162602582-162602832
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATATGGTTTTATTGTTTCAGTCT
3' ss Score
6.94
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATAAACGGGTGTACATGACCGTTGCAGTGGACATGGTGGTCACAGAGGTGGTGGAGCCAGTCCGTTTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAAATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGGTTGAAACAG
Seq A exon
TCTGAGGGAAAAGGCCACAGCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCCCATCACCCCTACTAGTGCTGGGGGCCCAATGTCACCACAGGAGGATGAAGCAGAAGAGG
Seq C2 exon
ATCCTGGGCATGCTTCCCCTGACACTGTGGGCTTTCTCACTCTTTTCCTCTGAAGTACCCCTCCACTCCTTCTGCCATGTGGCTGCTTGTCTGCCATGTGGCTGCTTGCTGAACATGCTGGACTGTGACTTCAAAGGCATGGCTTTCTCTCTTTTCTCCGTCACCAAGTTACAGCTTGCCTGTTCTATTTTTTCCTTCTTGTTTTTCCTGTCTCTGAAACTTTAATAAAACTGTTCTTGAGCTTCAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-'12-16,'12-15,13-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.535 C2=0.353
Domain overlap (PFAM):
C1:
PF124733=DUF3694=PD(27.1=64.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAGTCCGTTTTCTCCTG
R:
TCACAGTCCAGCATGTTCAGC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: