MmuEX6028614 @ mm10
Exon Skipping
Gene
ENSMUSG00000026721 | Rabgap1l
Description
RAB GTPase activating protein 1-like [Source:MGI Symbol;Acc:MGI:1352507]
Coordinates
chr1:160672709-160700878:-
Coord C1 exon
chr1:160700712-160700878
Coord A exon
chr1:160682041-160682182
Coord C2 exon
chr1:160672709-160672809
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATATGGTTTTATTGTTTCAGTCT
3' ss Score
6.94
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATAAACGGGTGTACATGACCGTTGCAGTGGACATGGTGGTCACAGAGGTGGTGGAGCCAGTCCGTTTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAAATGAGAGATTTTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGGTTGAAACAG
Seq A exon
TCTGAGGGAAAAGGCCACAGCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCCCATCACCCCTACTAGTGCTGGGGGCCCAATGTCACCACAGGAGGATGAAGCAGAAGAGG
Seq C2 exon
TTGTTCCATGTAGAAGCTGCTTAGGGAGCCTCAGCCACAAAGCTATTAAGTCCCCCTGCTCTTTTGAGTTACTCAGAAAAGTATAGCTTTTTCTGTTTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026721-'27-29,'27-28,28-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.537 C2=NA
Domain overlap (PFAM):
C1:
PF124733=DUF3694=PD(27.1=64.3)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGGTGTACATGACCGTTG
R:
TTCTGAGTAACTCAAAAGAGCAGGG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types