DreEX6098772 @ danRer10
Exon Skipping
Gene
ENSDARG00000071381 | si:dkey-78l4.11
Description
si:dkey-78l4.11 [Source:ZFIN;Acc:ZDB-GENE-060503-269]
Coordinates
chr22:19479207-19479931:-
Coord C1 exon
chr22:19479799-19479931
Coord A exon
chr22:19479461-19479712
Coord C2 exon
chr22:19479207-19479377
Length
252 bp
Sequences
Splice sites
3' ss Seq
GAAGGTGTTTTGAATTACAGCTA
3' ss Score
4.34
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGGTGACACTCTGAAAATTGTGGTTGGTGCCCATAACTTGGCTGACAGTAAGAGTTTGATCCATTTTAAAGTGAAATCCTACATCAAGCATCCAGGCTACGCATTGTTTCAAAATGACATCATGCTTTTGAAG
Seq A exon
CTACAAGAGAAAGTCAAACTAAACAAAAACATTAGACTGATATCATTACCAAAGGATGGAAAAGATGCTAAAGCAGATACTATCTGCAGTGTGGCTGGTTGGGGGGATCTATGGAATAATGGCCCAGTGAGTGACCGTCTAATGGAAGCTAACACAAGTATAGTGAGCGATGCAGAGTGTGAACGCAGATGGGGATCTGTTTACAAGGACTCAAAGATGATGTGTGTATATGGTCATGGTGGATCCTGCACT
Seq C2 exon
GGTGACGAAGGAGGTCCTTTGGTTTGTGGAAACACTGCTGTTGGTGTCACAGCTTTCGGTGACCGTTATCTCTGTAATTCACGCCTGTATCCTAATGTGTATACCAAGATTTCAGCATATCTTCCATGGATTCGCAACATAGTTGGAAATTGTGATTGATTTCATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071381-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.3=100)
A:
PF0008921=Trypsin=PU(64.8=98.8)
C2:
PF0008921=Trypsin=PD(20.3=81.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACACTCTGAAAATTGTGGT
R:
TCAATCACAATTTCCAACTATGTTGC
Band lengths:
292-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]