MmuEX6049643 @ mm10
Exon Skipping
Gene
ENSMUSG00000061780 | Cfd
Description
complement factor D (adipsin) [Source:MGI Symbol;Acc:MGI:87931]
Coordinates
chr10:79891703-79892655:+
Coord C1 exon
chr10:79891703-79891850
Coord A exon
chr10:79891992-79892249
Coord C2 exon
chr10:79892425-79892655
Length
258 bp
Sequences
Splice sites
3' ss Seq
TCTGCCCCTCCCACCCTTAGCTA
3' ss Score
8.39
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GACGGATGACGACTCTGTGCAGGTGCTCCTGGGTGCCCACTCCCTGTCCGCCCCTGAACCCTACAAGCGATGGTATGATGTGCAGAGTGTAGTGCCTCACCCGGGCAGCCGACCTGACAGCCTTGAGGACGACCTCATTCTTTTTAAG
Seq A exon
CTATCCCAGAATGCCTCGTTGGGTCCCCACGTGAGACCCCTACCCTTGCAATACGAGGACAAAGAAGTGGAACCCGGCACGCTCTGCGACGTGGCTGGTTGGGGTGTGGTCACCCATGCAGGACGCAGGCCTGATGTCCTGCATCAACTCAGAGTGTCAATCATGAACCGGACAACCTGCAATCTGCGCACGTACCATGACGGGGTAGTCACCATTAACATGATGTGTGCAGAGAGCAACCGCAGGGACACTTGCAGG
Seq C2 exon
GGAGACTCCGGCAGCCCTCTAGTGTGCGGGGATGCAGTCGAAGGTGTGGTTACGTGGGGCTCTCGCGTCTGTGGCAATGGCAAAAAGCCGGGCGTCTATACCCGAGTGTCATCCTACCGGATGTGGATCGAAAACATCACAAATGGTAACATGACATCCTGAGGGGACACCAGAGACACGTGGCTCAGGGAAACAAGAGACACGTGGCTCACAATAAATGCATGCATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061780_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.058 C2=0.019
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.9=100)
A:
PF0008921=Trypsin=FE(37.9=100)
C2:
PF0008921=Trypsin=PD(18.8=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACCCTACAAGCGATGG
R:
AGCCACGTGTCTCTTGTTTCC
Band lengths:
305-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types