GgaEX1027931 @ galGal3
Exon Skipping
Gene
ENSGALG00000015192 | F1NTI2_CHICK
Description
NA
Coordinates
chr28:2555024-2555837:-
Coord C1 exon
chr28:2555708-2555837
Coord A exon
chr28:2555268-2555516
Coord C2 exon
chr28:2555024-2555179
Length
249 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCGCACCGCCCACAGCTG
3' ss Score
7.31
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
Exon sequences
Seq C1 exon
GATGATGGTGGTGGTGGGGCTGCACCGACTGCAGGAGCGCAGGAACGCCCAGAGCTTCGCCATCCGCTCTGCCTGTCCCCATCCCGGCTACGACAGCCAGACGATGGAGGACGACCTCCTTCTGCTGCAG
Seq A exon
CTGGAGGGGAAGGTGAAGCGCAGCAAAAGGCAGCGACCCATCGCGCTGCTGCGGCGGGAGCCGGCGGTGGGCACCGTGTGCAGCCTGGCGGGCTGGGGCGGGCGGAGGGGGCTGAAGGCCGCCCTGCAGGAGCTGGAGGTGGCCGTGCTGGACACGAGGATGTGCAACAACAGCCGCTTCTGGAACGGCGACCTCACACCCAGCATGATCTGCTTCGAGGGCCGCGGCCGCGGCGAAGCGCCCACCAGT
Seq C2 exon
GGTGACTCCGGGAGCCCCCTGGTGTGCGGGCGCCCGGCGGCGGTGGCGGGCGTGATGTCCTTCTCCAGCCGCAACCCCACTGACCCCCTAAAGCCCCCCGTGGCCACCTCGGCAGTGAAGCACCACTTAAGGGTCCGGCGCACGCTGCGGCGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015192-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.181 C2=0.673
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.1=100)
A:
PF0008921=Trypsin=FE(38.3=100)
C2:
PF0008921=Trypsin=PD(19.2=78.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGTGGTGGTGGGG
R:
CCGGACCCTTAAGTGGTGCTT
Band lengths:
268-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]