BtaEX6040113 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002100 | GZMM
Description
granzyme M (lymphocyte met-ase 1) [Source:HGNC Symbol;Acc:HGNC:4712]
Coordinates
chr7:44802310-44803445:+
Coord C1 exon
chr7:44802310-44802445
Coord A exon
chr7:44802606-44802869
Coord C2 exon
chr7:44803272-44803445
Length
264 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTCCTGTCCCTATAGCTG
3' ss Score
11.01
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GACGCAGCAGCTGAGGCTTGTGCTGGGGCTTCATGTGCTGGGAGAGATCAGCCCTATCTACCGCATCAGGAAGGTGGTCCGGCACCCCGAATACAAGCCAGTCCCTCATCTGGAGAATGACCTCGCACTGCTAAAG
Seq A exon
CTGGACGGGAAGGTGAAGCCCAGCAGGACCATCCAGCCCCTGGCGTTGCCCCGAGGGCGCCAGATGGTGGCCACAGGCACCCGGTGCAGCCTGGCCGGCTGGGGCCTGACCCACCAGCCTGGGAACCTGGCCAGGGTGCTGCAGGAGCTGGACGTGCATGTGTTGGACACCAGGATGTGCAACAACAGTCGGTTCTGGCACGGCAACATCAGCTCCCACATGATCTGCCTGGCAGCTGACTCCAAGAACCAGGCCCCCTGCAAG
Seq C2 exon
GGGGACTCAGGAGGGCCGGTGGTGTGCAAAAGAGGCCAAGTGGCTGGAATCCTGTCCTTCAGCTCTGAGAATTGCACCGACATCTTCAAACCCCCCGTGGCTGTCGCTGTGGCCCCCTACATGCCCTGGATCAAGAAGGTCCTCCGCCACAATGGCTCACCTCCCTCACCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002100-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.140
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.1=100)
A:
PF0008921=Trypsin=FE(38.8=100)
C2:
PF0008921=Trypsin=PD(19.2=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGCTGGGGCTTCATGTG
R:
TCAAGGTGAGGGAGGTGAGC
Band lengths:
294-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]