GgaEX1027931 @ galGal4
Exon Skipping
Gene
ENSGALG00000015192 | GZMM
Description
granzyme M (lymphocyte met-ase 1) [Source:HGNC Symbol;Acc:HGNC:4712]
Coordinates
chr28:3114497-3115364:-
Coord C1 exon
chr28:3115220-3115364
Coord A exon
chr28:3114780-3115028
Coord C2 exon
chr28:3114497-3114691
Length
249 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCGCACCGCCCACAGCTG
3' ss Score
7.31
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
Exon sequences
Seq C1 exon
TGCCGATGTCTCCAGGATGATGGTGGTGGTGGGGCTGCACCGACTGCAGGAGCGCAGGAACGCCCAGAGCTTCGCCATCCGCTCTGCCTGTCCCCATCCCGGCTACGACAGCCAGACGATGGAGGACGACCTCCTTCTGCTGCAG
Seq A exon
CTGGAGGGGAAGGTGAAGCGCAGCAAAAGGCAGCGACCCATCGCGCTGCTGCGGCGGGAGCCGGCGGTGGGCACCGTGTGCAGCCTGGCGGGCTGGGGCGGGCGGAGGGGGCTGAAGGCCGCCCTGCAGGAGCTGGAGGTGGCCGTGCTGGACACGAGGATGTGCAACAACAGCCGCTTCTGGAACGGCGACCTCACACCCAGCATGATCTGCTTCGAGGGCCGCGGCCGCGGCGAAGCGCCCACCAGT
Seq C2 exon
GGTGACTCCGGGAGCCCCCTGGTGTGCGGGCGCCCGGCGGCGGTGGCGGGCGTGATGTCCTTCTCCAGCCGCAACCCCACTGACCCCCTCAAGCCCCCCGTGGCCACCTCGGCAGTGAAGCACCACGCGTGGATCCGGCGCACGCTGCGGCGCGGCTGCGCGGCACAGACGGAGCAGCCCCAGCTATTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015192-'2-4,'2-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.169 C2=0.662
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.6=100)
A:
PF0008921=Trypsin=FE(36.9=100)
C2:
PF0008921=Trypsin=PD(19.8=67.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGGTGGTGGGGCT
R:
GGGGCTGCTCCGTCTGTG
Band lengths:
308-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]