RnoEX6030670 @ rn6
Exon Skipping
Gene
ENSRNOG00000030530 | Gzmm
Description
granzyme M [Source:RGD Symbol;Acc:620022]
Coordinates
chr7:12893432-12894596:-
Coord C1 exon
chr7:12894458-12894596
Coord A exon
chr7:12894096-12894362
Coord C2 exon
chr7:12893432-12893705
Length
267 bp
Sequences
Splice sites
3' ss Seq
TGGTCCTCCTGTCCCCACAGCTG
3' ss Score
10.91
5' ss Seq
AAGGTGACA
5' ss Score
5.19
Exon sequences
Seq C1 exon
GCTACAGCAGCTGAAGCTGGTGTTCGGCCTGCACAGCCTTCATGATCCCCAAGATCCTGGCCTTACCTTCTACATCAAGCAAGCCATTAAACACCCTGGCTACAACCTCAAATACGAGAACGACCTGGCCCTGCTTAAG
Seq A exon
CTGGATGGACGGGTGAAGCCCAGCAAGAATGTCAAACCACTGGCTCTGCCAAGAAAGCCCCGAGACAAGCCTGCAGAAGGCTCCCGGTGTAGCACGGCTGGATGGGGTATAACCCACCAGAGGGGACAGCTAGCCAAGTCCCTGCAGGAGCTCGACCTGCGTCTTCTGGACACCCGGATGTGTAACAACAGCCGCTTCTGGAACGGTGTCCTCACGGACAGCATGCTGTGCTTAAAGGCTGGGGCCAAGGGCCAAGCTCCTTGCAAG
Seq C2 exon
GGTGACTCTGGAGGGCCCCTGGTGTGTGGCAAAGGCAAGGTGGATGGGATCCTGTCTTTCAGCTCCAAAAACTGCACAGACATCTTCAAGCCCACCGTGGCCACTGCTGTAGCCCCCTACAGCTCCTGGATCAGGAAGGTCATTGGTCGCTGGTCACCCCAGCCTCTGACCTGATGTCCCAAACTATCTGGGACATCATTCTTGATGTCTGGGGCTGGGAAGGGACTAGGTGTGCCTCTGGGGATCAATAAATCCTGATATATCTGTTGAGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030530-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.4=100)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=PD(19.1=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCTGGCTACAACCTCAA
R:
ATTGATCCCCAGAGGCACACC
Band lengths:
298-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]