MmuEX6049587 @ mm10
Exon Skipping
Gene
ENSMUSG00000054206 | Gzmm
Description
granzyme M (lymphocyte met-ase 1) [Source:MGI Symbol;Acc:MGI:99549]
Coordinates
chr10:79694124-79695261:+
Coord C1 exon
chr10:79694124-79694262
Coord A exon
chr10:79694351-79694617
Coord C2 exon
chr10:79694987-79695261
Length
267 bp
Sequences
Splice sites
3' ss Seq
TGATTCTCCTGTCCCCACAGCTA
3' ss Score
10.7
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTACAGAACCTGAAGCTGGTGCTTGGCCTGCACAACCTCCATGATCTCCAAGATCCTGGCCTCACCTTCTACATCCGGGAAGCCATTAAACACCCTGGCTACAACCACAAATATGAGAACGACCTGGCACTGCTTAAG
Seq A exon
CTAGATAGACGAGTGCAGCCCAGCAAGAATGTCAAACCACTAGCTCTGCCAAGAAAGCCCCGATCCAAGCCGGCAGAAGGTACCTGGTGCAGCACAGCTGGCTGGGGAATGACCCACCAGGGTGGGCCCCGGGCCAGGGCCCTGCAGGAGTTGGATCTGCGTGTGCTGGATACCCAAATGTGTAACAACAGCCGCTTCTGGAACGGTGTCCTCATAGACAGCATGCTATGCTTAAAGGCTGGGAGCAAGAGCCAAGCCCCCTGCAAG
Seq C2 exon
GGTGACTCTGGAGGGCCCCTGGTGTGTGGCAAAGGCCAGGTGGATGGGATCCTGTCTTTCAGCTCCAAAACCTGCACAGACATCTTCAAGCCACCTGTGGCCACTGCTGTAGCCCCCTACAGCTCCTGGATCAGGAAGGTCATTGGTCGCTGGTCACCCCAATCTTTGGTCTGATGTCCCAGATCATCTGGGACACCATTCTTGATAGCGGGGGCTGGGAAGGGACTAGGTGTGCCTCTGAGGACCAATAAATCCTGATATATCTGTTGAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054206-'1-6,'1-4,7-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.112 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.4=100)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=PD(19.1=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAAGATCCTGGCCTCAC
R:
CCCCCGCTATCAAGAATGGTG
Band lengths:
308-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types