GgaEX1015078 @ galGal4
Exon Skipping
Gene
ENSGALG00000027497 | CFD
Description
complement factor D (adipsin) [Source:HGNC Symbol;Acc:HGNC:2771]
Coordinates
chr28:2751846-2753071:+
Coord C1 exon
chr28:2751846-2751990
Coord A exon
chr28:2752255-2752512
Coord C2 exon
chr28:2752734-2753071
Length
258 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCCTCTCGGTGGCAGCTG
3' ss Score
8.27
5' ss Seq
AAGGTCGGA
5' ss Score
4.85
Exon sequences
Seq C1 exon
GGGGGATAAACGCTTCCAGGTGCTGCTGGGCGCCCATTCACTGACGGAACCGGAGCCCCACAAACGGCTCTACGACGTGCGGGCACAAATCGCCCACCCCGGCAGCAACATCCACAACAACCGGGACGACCTCCTGCTGCTCCAG
Seq A exon
CTGGAGGAGAAAGCGGAGCTGAACGAACACGTGCAGCCGCTGCCGTTCCAACGCGAGGACCGGGAGGTGGCGGCCGACACGCTTTGCAGCGCCGCGGGATGGGGGACGGTGACGCACAGCGGGAAGCGGCCGGATCGGCTGCAGGAGGTGCAACGCCCGGTGATCAGCAGAGAGCTCTGCAACCACCGCACCCGCCACGACCGCACCATCACCGAGAAGATGATGTGCACCGACTCCCGCAAGAAGGACACGTGCAAG
Seq C2 exon
GGTGACTCCGGGGGTCCTTTGGTCTGCAACGGTGTGGCTGAAGGGGTGGTGACGGCCGGCTCTCGTGTCTGCGGCAACTACAAGAAGCCGGCCATCTACACCCGCATCGCACCCTATGCTGAGTGGATTGATGGTGTGATGGCCTCCAGGGATGGGGATGTGGGCACCCGTTGAGCCCACACCGCTGGGCACAGAGGGGATGGGGACCCTGAGCTCATGGAGTGGGGGTTTGGGGGGGCTGAGCGACGCCCCGGGGAGGGGGAGGCACTGCTGCAGGCTTTGCTGGACACATCTGTATTGCAACCACCACAATAAAGCAACAGCAATTGCTGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027497-'3-7,'3-5,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.453 C2=0.105
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.5=100)
A:
PF0008921=Trypsin=FE(38.1=100)
C2:
PF0008921=Trypsin=PD(18.8=72.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATAAACGCTTCCAGGTG
R:
TGGAGGCCATCACACCATCAA
Band lengths:
292-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]