RnoEX0020626 @ rn6
Exon Skipping
Gene
ENSRNOG00000033564 | Cfd
Description
complement factor D [Source:RGD Symbol;Acc:2498]
Coordinates
chr7:12634216-12635145:-
Coord C1 exon
chr7:12634998-12635145
Coord A exon
chr7:12634595-12634852
Coord C2 exon
chr7:12634216-12634433
Length
258 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCCTCCCACTCTTAGCTC
3' ss Score
8.71
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GACCAAGGATGAGGTTGTGCAGGTGCTCCTGGGTGCCCACTCCCTGTCCAGTCCTGAACCCTACAAGCATTTGTATGATGTGCAAAGTGTAGTGCTTCACCCGGGCAGCCGGCCTGACAGCGTTGAGGACGACCTCATGCTCTTTAAG
Seq A exon
CTCTCCCACAATGCCTCACTGGGTCCCCATGTGAGACCCCTGCCCTTGCAACGCGAGGACCGGGAGGTGAAACCCGGCACGCTCTGCGATGTGGCCGGTTGGGGCGTGGTCACTCATGCGGGACGCAGGCCCGATGTCCTGCAGCAACTGACAGTGTCAATCATGGACCGGAACACCTGCAATCTGCGCACGTACCATGATAGGGCAATCACCAAGAACATGATGTGTGCAGAGAGCAACCGCAGGGACACTTGCAGG
Seq C2 exon
GGCGACTCCGGCGGTCCTCTGGTGTGCGGGGATGCGGTCGAAGCTGTGGTTACGTGGGGATCTCGAGTCTGTGGCAACCGGAGAAAGCCAGGTGTCTTTACCCGCGTGGCAACCTACGTGCCGTGGATTGAAAACGTTCTGAGTGGTAACGTGAGTGTTAACGTGACGGCCTGAGGGGACACCGGAGACCGTGACTCACAATAAATGCATGCATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033564-'2-7,'2-3,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.9=100)
A:
PF0008921=Trypsin=FE(37.9=100)
C2:
PF0008921=Trypsin=PD(18.8=72.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGATGAGGTTGTGCAGG
R:
TCACGTTACCACTCAGAACGT
Band lengths:
300-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]