DreEX0021212 @ danRer10
Exon Skipping
Gene
ENSDARG00000039579 | cfd
Description
complement factor D (adipsin) [Source:ZFIN;Acc:ZDB-GENE-050522-411]
Coordinates
chr13:13551190-13553342:+
Coord C1 exon
chr13:13551190-13551331
Coord A exon
chr13:13552730-13552990
Coord C2 exon
chr13:13553070-13553342
Length
261 bp
Sequences
Splice sites
3' ss Seq
AGATGCTATTGTTTTGACAGTTG
3' ss Score
5.48
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GAGGACATCTGGTGTTAAGGTTGTTTTGGGTGCTCACTCGTTGTCTGGAGCCGAGGACACAAAGCAAACTTTTGATGCTGAAGTATACAACCATCCTGATTTCAGCATTAGCAACTATGACAATGACATTGCCCTGATTAAG
Seq A exon
TTGGATAAGCCAGTCACTCAGAGCGATGCAGTCAAACCAGTGAAATTCCAGCGTGATGAGACGGCTGACCCTAAAGAAGCTGCTGTTGTAGAAACGGCTGGTTGGGGCTCATTGAACAACATGGGAGGACGACCTGACAAACTTCATGAGCTCAGTATCCCAGTAATGGAGCGATGGCGCTGTGGCCGTGCTGACTTCTATGGAGAGAAGTTTACCAGCAACATGCTCTGTGCTGCAGACAAAAGAAAGGACACCTGTGAT
Seq C2 exon
GGGGACTCCGGCGGTCCTCTTTTATACAGAGGCATTGTTGTCGGAATAACGTCTAATGGAGGGAAGAAATGTGGCTCCTCCAGAAAGCCTGGACTCTACACAATCATTTCCCACTACGCTAGTTGGATTGATACTACAACTACTAAGTAAAAAGTAAAAAGAATCAAATAAAATGTGGTGGAATCCTTTTTATATCTATGTATATTTTCATAGGTACATCTGTGCATCTTGTTTAATGCTACAATAATAAACGCTTTTCTACATTTATCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039579-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.161 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
PF0008921=Trypsin=FE(38.6=100)
C2:
PF0008921=Trypsin=PD(18.8=84.0)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCACTCGTTGTCTGGAG
R:
AAGGATTCCACCACATTTTATTTGA
Band lengths:
301-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]