DreEX6099091 @ danRer10
Exon Skipping
Gene
ENSDARG00000024775 | si:ch211-129c21.1
Description
si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
Coordinates
chr22:22302983-22304654:-
Coord C1 exon
chr22:22304592-22304654
Coord A exon
chr22:22304408-22304506
Coord C2 exon
chr22:22302983-22303082
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGTTTTTTTCAGATC
3' ss Score
13.04
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTGCTTTGGAAAGTCACTGAGGAGAAACAAAAGGAGTGCACCTCTAAAGGAAAACATCCTGAC
Seq A exon
ATCGACTGTCATAACTATATACGGATGCTGCATCAGATGAATGACAGTGTGATGTACATTTGTGGAACAAACGCCTTTAGCCCCACCTGTGATTATATA
Seq C2 exon
ACGTATGATAATGGGCAGCTGCAGCTGGAGGGAAAACAGGAGGACGGGAGGGGGAAATGCCCTTTTGATCCCTTCCAGAGGTCCTCTTCCGTCATGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024775-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
PF0140314=Sema=FE(7.4=100)
C2:
PF0140314=Sema=FE(7.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTTGGAAAGTCACTGAGGA
R:
CCATGACGGAAGAGGACCTCT
Band lengths:
160-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]