DreEX6100640 @ danRer10
Exon Skipping
Gene
ENSDARG00000104235 | myo5c
Description
myosin VC [Source:ZFIN;Acc:ZDB-GENE-131127-196]
Coordinates
chr25:4682713-4683215:+
Coord C1 exon
chr25:4682713-4682806
Coord A exon
chr25:4682879-4682942
Coord C2 exon
chr25:4683035-4683215
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGAAAAATCTGTTTTTCAGATC
3' ss Score
8.54
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCAATCGATGTGCTTCAGAATGACAAAGAGAAGCTTGTTGAGGAAAATAAGGCTTTGGAGCGGAAACTCAAAGATACGACTGTGCAGATGCAAG
Seq A exon
ATCAATTTGAGGATGTGAAGCGGAAGCTGATGGAAGATTTAGAAAGAGAGGAAAGACTAAGAAA
Seq C2 exon
GGTGGCAGAGCACAACAGTGAACTGCAGAAGGAAGACTCGGACAAAGAAATTGTGGCGATAAAAGAGGAAAACCGTAGACTGAGAGAGGAGCGAATCAGACTGCAAACGCAAGTGGAGGAGGACGTGAAGACCAACACAGAACTGCAAGAGCAAATGCTGCAGCTCACCAAACACGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104235-'25-31,'25-30,26-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.409 C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGAGCGGAAACTCAAA
R:
TGCAGTCTGATTCGCTCCTCT
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]