GgaEX1038150 @ galGal4
Exon Skipping
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8350237-8352133:+
Coord C1 exon
chr10:8350237-8350330
Coord A exon
chr10:8350872-8350935
Coord C2 exon
chr10:8351953-8352133
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATCACAATGTTTTTTGACAGAGA
3' ss Score
5.98
5' ss Seq
AATGTATGG
5' ss Score
3.37
Exon sequences
Seq C1 exon
AAAATATTGAAGCTTGAGAGTCAGAATAAGGAGTTACGAGAGCAGAAGGAGACCTTGGAAGTAAAGCTGCAAGAGAAAACGGAGGAAATGAAAG
Seq A exon
AGAAAATGGATGACCTCACCAAACAGCTCTTCGATGATGTACGAAAGGAAGAAAGTCAGAGAAT
Seq C2 exon
GATACTTGAGAAAAACTTCCAGAACCAGAGACAAGACTACGAAAAGGAAATTGAATCGCTCAAGGGAGAAATAAAGGTTCTCAGAGAAGAAAAAACGCAGCTACAGCAACAAATTCAGCAAGAGATGAGCATTCAGGATGACCTGAAAATGGAAGTAGGACAACTTACAAAACAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=0.636 C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCAAGAGAAAACGGAGG
R:
TGTTGCTGTAGCTGCGTTTTT
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]