RnoEX6036554 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82221512-82225506:+
Coord C1 exon
chr8:82221512-82221605
Coord A exon
chr8:82222697-82222760
Coord C2 exon
chr8:82225326-82225506
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATACCATTCTATGTCCACAGAAA
3' ss Score
9.79
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
AGATTGTCGAAGCTGCAGAAACACAATGCAGAGCTGGAGTCGCAGAGAGAGCGAGCAGAGCAGAGTCTACAAGAGAGGACTGAGGAGCTGAAAG
Seq A exon
AAAAAATGGACCAGCTCACCAGGCAGCTGTTTGATGACGTACAGAAAGAAGAACAGCAGAGACT
Seq C2 exon
ACTTCTTGAAAAAAGTTTTGAGCTGAAAACACAAGCTTATGAGAAAGAGATAGAGTCTCTGAGAGAAGAAATTAAAGCCCTCAAGGATGAGAGGACGCAGCTGCACCACCAGCTGGAGGAGGGACGGGTCACCTCTGACAGCCTGAAGGGGGAGGTGGCCCGTCTAAGCAAGCAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356-'30-33,'30-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.136 C2=0.279
Domain overlap (PFAM):
C1:
PF131661=AAA_13=FE(13.0=100)
A:
PF131661=AAA_13=FE(8.8=100)
C2:
PF131661=AAA_13=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGAGCAGAGCAGAGTCTA
R:
AGCTGCGTCCTCTCATCCTT
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]