DreEX6102116 @ danRer10
Exon Skipping
Gene
ENSDARG00000023886 | cacna2d4b
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100422-18]
Coordinates
chr25:18957470-18959728:-
Coord C1 exon
chr25:18959667-18959728
Coord A exon
chr25:18959480-18959547
Coord C2 exon
chr25:18957470-18957515
Length
68 bp
Sequences
Splice sites
3' ss Seq
TGTTCATGGTTTGCTTCCAGCTT
3' ss Score
7.13
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAAAGGCCCTTGTTTCTCAAAAATGATTATTTCTACACAACCATCGATGAAACTCCATTTAG
Seq A exon
CTTTGGGATGGTGCTTACGAAAGGTCACGGCCAGTACATGTTCTTTGGGAATGTGTCAGTGGAGGAAG
Seq C2 exon
GTCTTCATGATCTTCAGCAGCCAGACCTCACTATAGCAGAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023886-'22-22,'22-21,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGCCCTTGTTTCTCAAAA
R:
CTCTGCTATAGTGAGGTCTGGCT
Band lengths:
103-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]