DreEX6102679 @ danRer10
Exon Skipping
Gene
ENSDARG00000100953 | si:dkeyp-93a5.2
Description
si:dkeyp-93a5.2 [Source:ZFIN;Acc:ZDB-GENE-131127-18]
Coordinates
chr25:24997690-24999204:+
Coord C1 exon
chr25:24997690-24997766
Coord A exon
chr25:24998461-24998647
Coord C2 exon
chr25:24998757-24999204
Length
187 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTCACTGTGAACAGTCT
3' ss Score
6.09
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TACAGAGGACTAAACTATCTGAATAAAGATGTGGAGGAAAACTTGTGTGATTTTGTTGCTGGTGATGTGTGTCAGAG
Seq A exon
TCTCTCTCTCTCCGTCAGTTTGTGGACGTCCAAATCCCAACTTTAACCCTCGTATTGTGGGTGGTGTGAATGCAACTGAGGGCTCGTGGCCATGGATGGTCAGTCTGCGTAAGAGTGGTGTTCATTTTTGTGGTGGCTCCCTCATCAACAATCAATGGGTGCTGACAGCAGCTCACTGCATCAGTGG
Seq C2 exon
TAAAACCACATCCAGCATGCATGTGTACTTGGGAAAGTGGAGACGTTATGAAACTGACCAAAATGAAATCACCAGAACTGTCATAGACATCATTCCACATCCCTCCTACAATAACAGAACTTCTGATAATGACATCGCTCTGCTGCAGCTGTCAGCTACAGTTCAATATACTGTCTACATTAAACCCATATGTCTAGCAGATCAAAACAGCAACTTCCCTCGTGGGACCAGGAGCTGGGTCACAGGCTGGGGGCGTATTGGCGTTTCGGGCACAGGTGGTATAAGCGGCAGAACCACAGTGTCTGTGCCTTTACCTGCTCCTGGGATTCTGCAAGAGGTTGAGCTTCAAGTGTACAGTAATGAAAAATGCAGTAAACGTTGTCAGGGACCCATCACCCCCAACATGATTTGTGCTGGTACACGAAGTGGAGGCAAAGGAACCTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100953-'0-2,'0-1,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.3=69.8)
C2:
PF0008921=Trypsin=FE(62.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGCTGGTGATGTGTGTCA
R:
CCACGAGGGAAGTTGCTGTTT
Band lengths:
249-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]