HsaEX0066749 @ hg19
Exon Skipping
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:14134]
Coordinates
chr16:1272652-1274628:-
Coord C1 exon
chr16:1274602-1274628
Coord A exon
chr16:1273423-1273594
Coord C2 exon
chr16:1272652-1272917
Length
172 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCTCCTTCGACTTAGGGT
3' ss Score
9.74
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTGTGTCCCTCAGGACTTTGCAGCCAG
Seq A exon
GGTGTGGCCGGCCGCAGGTTTCGGATGCAGGCGGCCGGATCGTGGGGGGTCACGCTGCCCCGGCCGGCGCATGGCCATGGCAGGCCAGCCTCCGCCTGCGGAGGGTGCACGTGTGCGGCGGGTCACTGCTCAGCCCCCAGTGGGTGCTCACAGCTGCCCACTGCTTCTCCGG
Seq C2 exon
GTCCCTGAACTCATCCGACTACCAGGTGCACCTGGGGGAACTGGAGATCACTCTGTCTCCCCACTTCTCCACCGTGAGGCAGATCATCCTGCACTCCAGCCCCTCAGGACAGCCGGGGACCAGCGGGGACATCGCCCTGGTGGAGCTCAGTGTCCCCGTGACCCTCTCCAGCCGGATCCTGCCCGTCTGCCTCCCGGAGGCCTCAGATGACTTCTGCCCTGGGATCCGGTGCTGGGTGACCGGCTGGGGCTATACGCGGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGACTTTGCAGCCAG
R:
ATCCCAGGGCAGAAGTCATCT
Band lengths:
245-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)