GgaEX1037243 @ galGal4
Exon Skipping
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2481750-2482190:+
Coord C1 exon
chr12:2481750-2481886
Coord A exon
chr12:2481971-2482006
Coord C2 exon
chr12:2482079-2482190
Length
36 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCTTTCTCTCTGCAGCCG
3' ss Score
11.89
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GATCTCGCCCACCACCCACCCCGAGGCACACCTGGAGAAGAACTACTGCCGCAACCCCGACAACGACAGCCACGGCCCCTGGTGCTACACCATGGATCCACGCACACCCTTTGACTACTGTGCCATCAAGCCCTGCT
Seq A exon
CCGGCAGCGCTGTGCCGTCTGTCCTGGAGAACGCAG
Seq C2 exon
ATGCAGTGACATTCGAGGAGTGCGGCCGGCGGGACGAGAGGCTGCAGCAGAAGCAACGTGTGGTGGGTGGGATGCCCGGCAACTCGCCGTGGACCGTCAGCATCCGCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-'14-16,'14-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.000 C2=0.289
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NO
C2:
PF0008921=Trypsin=PU(7.7=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAACTACTGCCGCAACC
R:
CGCACTCCTCGAATGTCACTG
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]