MmuEX6068819 @ mm10
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108083254-108083702:+
Coord C1 exon
chr9:108083254-108083390
Coord A exon
chr9:108083479-108083514
Coord C2 exon
chr9:108083594-108083702
Length
36 bp
Sequences
Splice sites
3' ss Seq
GAGTGAACTTGATCTTGCAGATG
3' ss Score
7.44
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAACTTCTGCAGGAATCCTGATGGGGATAGCCATGGGCCCTGGTGCTATACCTTGGACCCGGATATCCTGTTTGACTACTGTGCCCTACAGCGCTGTG
Seq A exon
ATGATGACCAGCCACCATCCATTCTGGACCCCCCAG
Seq C2 exon
ACCAGGTGGTGTTTGAAAAGTGTGGCAAGAGAGTTGACAAGAGTAATAAACTTCGTGTGGTGGGAGGCCATCCTGGGAACTCCCCATGGACGGTCAGCTTGCGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'12-18,'12-14,19-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.385 C2=0.216
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NO
C2:
PF0008921=Trypsin=PU(7.7=45.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGACCCGGATATCCTGT
R:
CCTCCCACCACACGAAGTTTA
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types