DreEX0047657 @ danRer10
Exon Skipping
Gene
ENSDARG00000103308 | mst1
Description
macrophage stimulating 1 [Source:ZFIN;Acc:ZDB-GENE-020806-3]
Coordinates
chr6:53405669-53408976:-
Coord C1 exon
chr6:53408840-53408976
Coord A exon
chr6:53405867-53405899
Coord C2 exon
chr6:53405669-53405780
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTATGTTGTAACAGCTG
3' ss Score
6.88
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GATAAACCCCAAAACACACCCAGAAGCAAACCTTACGGACAACTACTGCAGGAATCCAGACGGAGATCATCACGGCCCCTGGTGCTACACCTCTGACCCCAAGACTGAGTTTGACTACTGCGCCATCAAGCAGTGCG
Seq A exon
CTGGAGAGAAAGTGCCAATCATCGGTCCAACAA
Seq C2 exon
CCGAGGTTGAGTTTAATGAGTGCGGAAAGCGTGAAGACCGGCTGAGGTCCAGGTTAAGAATCGTGGGCGGCACACCTGGAAACTCCCCCTGGACCGTCAGCCTCAGAGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103308-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.000 C2=0.237
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NO
C2:
PF0008921=Trypsin=PU(7.7=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTGACCCCAAGACTGA
R:
CGCCCACGATTCTTAACCTGG
Band lengths:
119-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]