HsaEX6056040 @ hg19
Exon Skipping
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49722695-49723165:-
Coord C1 exon
chr3:49723029-49723165
Coord A exon
chr3:49722904-49722939
Coord C2 exon
chr3:49722695-49722815
Length
36 bp
Sequences
Splice sites
3' ss Seq
CAGTGAACTTTGTCTTTCAGCTG
3' ss Score
6.91
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
Exon sequences
Seq C1 exon
GTTCACGTTTACCTCCGAACCGCATGCACAACTGGAGGAGAACTTCTGCCGGAACCCAGATGGGGATAGCCATGGGCCCTGGTGCTACACGATGGACCCAAGGACCCCATTCGACTACTGTGCCCTGCGACGCTGCG
Seq A exon
CTGATGACCAGCCGCCATCAATCCTGGACCCCCCAG
Seq C2 exon
ACCAGGTGCAGTTTGAGAAGTGTGGCAAGAGGGTGGATCGGCTGGATCAGCGGCGTTCCAAGCTGCGCGTGGTTGGGGGCCATCCGGGCAACTCACCCTGGACAGTCAGCTTGCGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-'23-30,'23-28,25-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.462 C2=0.390
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NO
C2:
PF0008921=Trypsin=PU(7.7=41.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCTGCCGGAACCCAGAT
R:
TGCCACACTTCTCAAACTGCA
Band lengths:
124-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)