BtaEX6095368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51083906-51084377:+
Coord C1 exon
chr22:51083906-51084042
Coord A exon
chr22:51084130-51084165
Coord C2 exon
chr22:51084257-51084377
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCTGAATTTGGATCTTTCAGATG
3' ss Score
5.5
5' ss Seq
CACGTATGG
5' ss Score
4.53
Exon sequences
Seq C1 exon
GTTCAAGCACACTTCTGCCCCGCACACGCCCCTGGAGGAAAACTTCTGCCGGAACCCAGACGGGGATAGTCACGGGCCCTGGTGCTACACCACGGACCCAGGGACTCCATTCGACTACTGTGCGCTGCGGCGCTGTG
Seq A exon
ATGATGACCAACAGCCGTCCATCCTGGAGACTGCAC
Seq C2 exon
ACCAGGTGCTGTTTGATAAATGTGGCAAGAGAGTGACACGAGTGGACCCGTTGCACTCCAAGCTGCGTGTGGTCGGGGGCCAGCCTGGGAACTCACCCTGGACAGTCAGCTTGCGCAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.000 C2=0.220
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NO
C2:
PF0008921=Trypsin=PU(7.7=41.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGGGGATAGTCACGGG
R:
CTCGTGTCACTCTCTTGCCAC
Band lengths:
123-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]