MmuEX6068819 @ mm9
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:107985585-107986033:+
Coord C1 exon
chr9:107985585-107985721
Coord A exon
chr9:107985810-107985845
Coord C2 exon
chr9:107985925-107986033
Length
36 bp
Sequences
Splice sites
3' ss Seq
GAGTGAACTTGATCTTGCAGATG
3' ss Score
7.44
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATTTACACCCACCTCGGCACCGCAGGCGGGACTGGAGGCCAACTTCTGCAGGAATCCTGATGGGGATAGCCATGGGCCCTGGTGCTATACCTTGGACCCGGATATCCTGTTTGACTACTGTGCCCTACAGCGCTGTG
Seq A exon
ATGATGACCAGCCACCATCCATTCTGGACCCCCCAG
Seq C2 exon
ACCAGGTGGTGTTTGAAAAGTGTGGCAAGAGAGTTGACAAGAGTAATAAACTTCGTGTGGTGGGAGGCCATCCTGGGAACTCCCCATGGACGGTCAGCTTGCGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=0.385 C2=0.216
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NO
C2:
PF0008921=Trypsin=PU(7.7=45.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGACCCGGATATCCTGT
R:
CCTCCCACCACACGAAGTTTA
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: