RnoEX0056123 @ rn6
Exon Skipping
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116860488-116860942:+
Coord C1 exon
chr8:116860488-116860624
Coord A exon
chr8:116860712-116860747
Coord C2 exon
chr8:116860834-116860942
Length
36 bp
Sequences
Splice sites
3' ss Seq
GAGTGAACTTGGTCTTGCAGATG
3' ss Score
6.96
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATTCACACCCACCTCAGCACCACATGCAGGCTTGGAGGCAAACTTTTGCCGGAATCCGGATGGAGATAGCCATGGGCCCTGGTGTTATACTTTGGACCCAGAGACCCTGTTTGACTACTGTGCCCTAAAACGCTGTG
Seq A exon
ATGATGACCAGCCACCATCCATCTTGGACCCCCCAG
Seq C2 exon
TCCAGGTGCAGTTTGAAAAGTGTGGCAAGAGAGTTGACCAGAGTAATAGACTTCGTGTGGTGGGGGGTCATCCTGGGAACTCACCGTGGACAGTCAGCTTGCGGAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-'20-14,'20-13,21-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.231 C2=0.243
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(57.0=95.7)
A:
NO
C2:
PF0008921=Trypsin=PU(7.7=45.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGACCCAGAGACCCTGTTT
R:
CCCCCACCACACGAAGTCTAT
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]