RnoEX6046626 @ rn6
Exon Skipping
Gene
ENSRNOG00000018701 | Tpsg1
Description
tryptase gamma 1 [Source:RGD Symbol;Acc:631355]
Coordinates
chr10:14727180-14730058:+
Coord C1 exon
chr10:14727180-14727228
Coord A exon
chr10:14729062-14729233
Coord C2 exon
chr10:14729793-14730058
Length
172 bp
Sequences
Splice sites
3' ss Seq
CAGTGCCTCCTCTGGATCAGGGT
3' ss Score
4.56
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGGCCCTGGGGCCCTACTGTGGCTTCCTACTGCTTCTGGCTGTTCCTG
Seq A exon
GGTGTGGCCAGCCCCAGGTTTCACATGCAGGAAGTCGAATCGTGGGAGGGCACGCTGCCCAAGCTGGTGCATGGCCGTGGCAGGCTAGCCTCCGTCTGCAGAAGGTGCATGTGTGTGGAGGATCCCTGCTCAGTCCAGAATGGGTACTCACAGCAGCCCACTGCTTCTCTGG
Seq C2 exon
GTCTGTGAACTCGTCGGATTATGAGGTGCACTTGGGGGAGCTGACGATCACACTGTCTCCTCATTTCTCCACCGTAAAGCAAATTATCATGTACTCTAGTGCCCCAGGACCACCGGGGTCCAGTGGAGACATTGCCCTGGTGCAGCTGGCCACCCCGGTGGCTCTTTCCAGCCAGGTCCAGCCTGTGTGCCTTCCAGAGGCCTCAGCCGACTTCCACCCTGGGATGCAGTGTTGGGTGACAGGCTGGGGCTATACACAGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018701-'1-3,'1-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.3=75.9)
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTACTGCTTCTGGCTG
R:
CTGCATCCCAGGGTGGAAGTC
Band lengths:
256-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]